Teaching
I have been involved in organizing a number of bioinformatics and data science courses as well as designing collaborative peer learning activites. I have also been invited to teach in a variety of international data science training activities. See below for a selection of courses, workshops, and hackathons. I have also been teaching computer science modules and mentoring undergraduate students from 2005 to 2009 when I worked as an assistant professor at the Faculty of Sciences, Bizerte, Tunisia.
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Co-organizer. Introduction to Machine Learning: opportunities for advancing omics data analysis workshop, Basel Life Conference 2019. Basel, Switzerland. 2019
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Co-organizer and instructor. Advanced course on Bioinformatics: CODATA-RDA School of Research Data Science. ICTP, Trieste, Italy. 2018 & 2019
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Co-organizer and instructor. H3Africa fellows Professional Development and grants writing workshops. 13th meeting of the H3Africa consortium. April & July 2019
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Instructor. Scientific communication and Research ethics workshop. BecA-ILRI Hub Bioinformatics community of practice for Agriculture. April 2019
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Co-organizer and instructor. Introduction to Bioinformatics online course (Followed by more than 1000 African postgraduate students since 2016). 3 months per year, Online. 2016-present
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Co-organizer. H3ABioNet bioinformatics webinar series. Online. 2016-present (on a monthly basis)
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Coordinator and instructor. Wellcome Trust Africa Advanced NGS data analysis courses. Hinxton, UK and Johannesburg, South Africa. 2018-2019
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Member. Development of a Bioinformatics master degree curriculum and support of African groups planning to develop new bioinformatics degree programs. The African Bioinformatics Education Committee. 2014-Present
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Instructor. Reproducibility in Science module: Eastern Africa Network of Bioinformatics Training (EANBiT) Training Course. ICIPE, Nairobi, Kenya. 2018
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Instructor and module coordinator. Introduction to Sequence alignment and NGS Data analysis, Bioinformatics Community of Practice. BecA-ILRI Hub, Nairobi, Kenya. 2018
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Instructor and coordinator. NGS Data analysis hands on courses, International Pasteur Institutes Network (RIIP) and International Group for Data Analysis Network (IGDA). Institut Pasteur Senegal, France and Hong Kong. 2016-2017
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Co-organizer. H3ABioNet Journal club. Online. 2016-2017 (on a monthly basis)
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Co-organizer. DREAM of Malaria hackathon. IBM Research Africa, Johannesburg, South Africa. 2016
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Instructor. Bioinformatics analyses and annotation of variants NGS data workshop. University of Cape Town, South Africa. 2016
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Workshops chair. ISCB Africa ASBCB 2015 Conference on Bioinformatics. Dar es Salam, Tanzania. 2015
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Instructor. H3ABioNet, CUBRe Postgraduate Bioinformatics Workshop 2014. Covenant University, Ota, Nigeria. 2014
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Instructor and coordinator. The Informatics and Internet Certification (C2I) for life sciences and Physics bachelors. Faculty of Sciences, Bizerte, Tunisia. 2007-2009